McArt, Darragh G: search on Z-Library

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1

Modelling the comet assay

Darragh McArt, Robert Cairns, Gillian Wasson, Kurt Saetzler

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 144 KB

english, 2007

2

Analysis of wntless (WLS) expression in gastric, ovarian, and breast cancers reveals a strong association with HER2 overexpression

Stewart, Jonathan, James, Jacqueline, McCluggage, Glenn W, McQuaid, Stephen, Arthur, Kenneth, Boyle, David, Mullan, Paul, McArt, Darragh, Yan, Benedict, Irwin, Gareth, Harkin, D Paul, Zhengdeng, Lei,

Journal:

Modern Pathology

Year:

2015

Language:

english

File:

PDF, 1.87 MB

english, 2015

3

cudaMap: a GPU accelerated program for gene expression connectivity mapping

McArt, Darragh G, Bankhead, Peter, Dunne, Philip D, Salto-Tellez, Manuel, Hamilton, Peter, Zhang, Shu-Dong

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 263 KB

english, 2013

4

Modelling the comet assay

McArt, Darragh G., McKerr, George, Howard, C. Vyvyan, Saetzler, Kurt, Wasson, Gillian R.

Journal:

Biochemical Society Transactions

Year:

2009

Language:

english

File:

PDF, 132 KB

english, 2009

5

samExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

Stupnikov, Alexey, Tripathi, Shailesh, de Matos Simoes, Ricardo, McArt, Darragh, Salto-Tellez, Manuel, Glazko, Galina, Dehmer, Matthias, Emmert-Streib, Frank

Journal:

Year:

2016

Language:

english

File:

PDF, 853 KB

english, 2016

6

Quantification of HER2 heterogeneity in breast cancer–implications for identification of sub-dominant clones for personalised treatment

Buckley, Niamh E., Forde, Claire, McArt, Darragh G., Boyle, David P., Mullan, Paul B., James, Jacqueline A., Maxwell, Perry, McQuaid, Stephen, Salto-Tellez, Manuel

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.74 MB

english, 2016

7

PP28. THERAPEUTIC COMPOUND DISCOVERY AND VALIDATION OF DRUGS TARGETING A RECURRENT GLIOBLASTOMA (GBM) PHENOTYPE USING LINCS COMPOUNDS VIA QUADRATIC ANALYSES

Rashid, Dr Shahnaz Al, O’Reilly, Dr Paul, dunne, Dr philip, Alderdice, Mr Matthew, Flannery, Dr Thomas, Prise, Prof Kevin, Zhang, Dr Shu-Dong, McArt, Dr Darragh

Journal:

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

8

RALB GTPase: a critical regulator of DR5 expression and TRAIL sensitivity in KRAS mutant colorectal cancer

Khawaja, Hajrah, Campbell, Andrew, Roberts, Jamie Z., Javadi, Arman, OâReilly, Paul, McArt, Darragh, Allen, Wendy L., Majkut, Joanna, Rehm, Markus, Bardelli, Alberto, Di Nicolantonio, Federica, Scot

Journal:

Cell Death and Disease

Year:

2020

File:

PDF, 3.42 MB

2020

9

Defining the molecular evolution of extrauterine high grade serous carcinoma

Beirne, James P., McArt, Darragh G., Roddy, Aideen, McDermott, Clara, Ferris, Jennifer, Buckley, Niamh E., Coulter, Paula, McCabe, Nuala, Eddie, Sharon L., Dunne, Philip D., O'Reilly, Paul, Gilmore, A

Journal:

Gynecologic Oncology

Year:

2019

Language:

english

File:

PDF, 3.02 MB

english, 2019

10

Epidermal growth factor receptor immunohistochemistry: new opportunities in metastatic colorectal cancer

Hutchinson, Ryan A, Adams, Richard A, McArt, Darragh G, Salto-Tellez, Manuel, Jasani, Bharat, Hamilton, Peter W

Journal:

Journal of Translational Medicine

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

11

Natural killer-like signature observed post therapy in locally advanced rectal cancer is a determinant of pathological response and improved survival

Alderdice, Matthew, Dunne, Philip D, Cole, Aidan J, O’Reilly, Paul G, McArt, Darragh G, Bingham, Vicky, Fuchs, Marc-Aurel, McQuaid, Stephen, Loughrey, Maurice B, Murray, Graeme I, Samuel, Leslie M, La

Journal:

Modern Pathology

Year:

2017

Language:

english

File:

PDF, 2.47 MB

english, 2017

12

Gene expression profiling of patient-matched initial and recurrent glioblastoma

Roddy, Aideen, Stewart, Peter, Hirst, Theodore, Healy, Estelle, Lewis, Claire, Dunne, Philip, Salto-tellez, Manuel, Flannery, Tom, Prise, Kevin, McArt, Darragh

Journal:

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

13

A Novel Role for Cathepsin S as a Potential Biomarker in Triple Negative Breast Cancer

Wilkinson, Richard D. A., Burden, Roberta E., McDowell, Sara H., McArt, Darragh G., McQuaid, Stephen, Bingham, Victoria, Williams, Rich, Cox, Órla T., O’Connor, Rosemary, McCabe, Nuala, Kennedy, Richa

Journal:

Journal of Oncology

Year:

2019

Language:

english

File:

PDF, 3.65 MB

english, 2019

14

GENOMIC PROFILING OF PRIMARY AND MATCHED RECURRENT GLIOBLASTOMA TUMOURS REVEALS THAT THE MUTATIONAL LANDSCAPE INCLUDES CLINICALLY ACTIONABLE VARIATION

McInerney, Caitríona, Ellis, Hayley, Schrinpf, Daniel, Sahm, Felix, Stupnikov, Alexei, Wadsley, Marc, Wragg, Christopher, White, Paul, McArt, Darragh, Kurian, Kathreena

Journal:

Year:

2018

Language:

english

File:

PDF, 81 KB

english, 2018

15

Building a ‘Repository of Science’: The importance of integrating biobanks within molecular pathology programmes

Lewis, Claire, McQuaid, Stephen, Hamilton, Peter W., Salto-Tellez, Manuel, McArt, Darragh, James, Jacqueline A.

Journal:

European Journal of Cancer

Year:

2016

Language:

english

File:

PDF, 921 KB

english, 2016

16

A strong correlation between expression of Wntless and of human epidermal growth factor receptor 2 in gastric, ovarian, and breast cancers suggests a novel-signalling pathway involving NFκB and STAT3

Stewart, Jonathan, James, Jacqueline, McCluggage, Glenn, McQuaid, Stephen, Boyle, David, Arthur, Kenneth, Mullan, Paul, Kidson, Claire, McCabe, Nuala, Kennedy, Richard, McArt, Darragh, Carson, Anne, Y

Journal:

Year:

2013

Language:

english

File:

PDF, 43 KB

english, 2013

17

Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned

Li, Gerald, Bankhead, Peter, Dunne, Philip D, O’Reilly, Paul G, James, Jacqueline A, Salto-Tellez, Manuel, Hamilton, Peter W, McArt, Darragh G

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 752 KB

english, 2016

18

QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics

O’Reilly, Paul G., Wen, Qing, Bankhead, Peter, Dunne, Philip D., McArt, Darragh G., McPherson, Suzanne, Hamilton, Peter W., Mills, Ken I., Zhang, Shu-Dong

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

19

The prognostic significance of the aberrant extremes of p53 immunophenotypes in breast cancer

Boyle, David P, McArt, Darragh G, Irwin, Gareth, Wilhelm-Benartzi, Charlotte S, Lioe, Tong F, Sebastian, Elena, McQuaid, Stephen, Hamilton, Peter W, James, Jacqueline A, Mullan, Paul B, Catherwood, Ma

Journal:

Year:

2014

Language:

english

File:

PDF, 399 KB

english, 2014

20

Assessing the stability of clinically relevant prognostic, predictive and subtyping gene expression signatures based on intra-tumoural heterogeneity in colorectal cancer

Dunne, Philip, O'Reilly, Paul, Richman, Susan, Kay, Elaine, Salto-Tellez, Manuel, Johnston, Patrick, McArt, Darragh, Lawler, Mark

Journal:

European Journal of Surgical Oncology (EJSO)

Year:

2016

Language:

english

File:

PDF, 60 KB

english, 2016

21

Development and Validation of a 28-gene Hypoxia-related Prognostic Signature for Localized Prostate Cancer

Yang, Lingjian, Roberts, Darren, Takhar, Mandeep, Erho, Nicholas, Bibby, Becky A.S., Thiruthaneeswaran, Niluja, Bhandari, Vinayak, Cheng, Wei-Chen, Haider, Syed, McCorry, Amy M.B., McArt, Darragh, Jai

Journal:

Year:

2018

Language:

english

File:

PDF, 971 KB

english, 2018

22

Identification of Candidate Small-Molecule Therapeutics to Cancer by Gene-Signature Perturbation in Connectivity Mapping

McArt, Darragh G., Zhang, Shu-Dong, Di Bernardo, Diego

Journal:

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

23

QuPath: Open source software for digital pathology image analysis

Bankhead, Peter, Loughrey, Maurice B., Fernández, José A., Dombrowski, Yvonne, McArt, Darragh G., Dunne, Philip D., McQuaid, Stephen, Gray, Ronan T., Murray, Liam J., Coleman, Helen G., James, Jacquel

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.62 MB

english, 2017

24

Validation of Next Generation Sequencing Technologies in Comparison to Current Diagnostic Gold Standards for BRAF, EGFR and KRAS Mutational Analysis

McCourt, Clare M., McArt, Darragh G., Mills, Ken, Catherwood, Mark A., Maxwell, Perry, Waugh, David J., Hamilton, Peter, O'Sullivan, Joe M., Salto-Tellez, Manuel, Devaney, Joseph

Journal:

Year:

2013

Language:

english

File:

PDF, 737 KB

english, 2013

25

PICan: An integromics framework for dynamic cancer biomarker discovery

McArt, Darragh G., Blayney, Jaine K., Boyle, David P., Irwin, Gareth W., Moran, Michael, Hutchinson, Ryan A., Bankhead, Peter, Kieran, Declan, Wang, Yinhai, Dunne, Philip D., Kennedy, Richard D., Mull

Journal:

Molecular Oncology

Year:

2015

Language:

english

File:

PDF, 2.39 MB

english, 2015

26

Prostate cancer heterogeneity assessment with multi-regional sampling and alignment-free methods

Murphy, Ross G, Roddy, Aideen C, Srivastava, Shambhavi, Baena, Esther, Waugh, DavidÂ J, M.Â OâSullivan, Joe, McArt, Darragh G, Jain, Suneil, LaBonte, MelissaÂ J

Journal:

NAR Genomics and Bioinformatics

Year:

2020

File:

PDF, 1.20 MB

2020

27

Digital pathology and image analysis in tissue biomarker research

Hamilton, Peter W., Bankhead, Peter, Wang, Yinhai, Hutchinson, Ryan, Kieran, Declan, McArt, Darragh G., James, Jacqueline, Salto-Tellez, Manuel

Journal:

Year:

2014

Language:

english

File:

PDF, 5.47 MB

english, 2014

28

Depletion of DNMT1 in differentiated human cells highlights key classes of sensitive genes and an interplay with polycomb repression

O’Neill, Karla M., Irwin, Rachelle E., Mackin, Sarah-Jayne, Thursby, Sara-Jayne, Thakur, Avinash, Bertens, Ciske, Masala, Laura, Loughery, Jayne E. P., McArt, Darragh G., Walsh, Colum P.

Journal:

Epigenetics & Chromatin

Year:

2018

Language:

english

File:

PDF, 8.56 MB

english, 2018

29

Integrated tumor identification and automated scoring minimizes pathologist involvement and provides new insights to key biomarkers in breast cancer

Bankhead, Peter, Fernández, José A, McArt, Darragh G, Boyle, David P, Li, Gerald, Loughrey, Maurice B, Irwin, Gareth W, Harkin, D Paul, James, Jacqueline A, McQuaid, Stephen, Salto-Tellez, Manuel, Ham

Journal:

Laboratory Investigation

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

30

p16 as a prognostic indicator in ovarian/tubal high-grade serous carcinoma

Beirne, James P, McArt, Darragh G, James, Jacqueline A, Salto-Tellez, Manuel, Maxwell, Perry, McCluggage, W Glenn

Journal:

Year:

2016

Language:

english

File:

PDF, 547 KB

english, 2016

31

Mutational landscape of primary and recurrent glioblastoma reveals potentially actionable SNVs including WNT pathway variation

Ellis, Hayley, Sahm, Felix, Schrimpf, Daniel, Stupnikov, Alexei, Wadsley, Mark, Wragg, Christopher, McArt, Darragh, Kurian, Kathreena

Journal:

Year:

2018

Language:

english

File:

PDF, 47 KB

english, 2018

32

Patient stratification into robust cancer-cell intrinsic subtypes from colorectal cancer biopsies may inform prospective clinical trials

Alderdice, Matt, McCorry, Amy, Isella, Claudio, McArt, Darragh, Richman, Susan, Morton, Dion, Quirke, Philip, McDermott, Ultan, Tomlinson, Ian, Murray, Graeme, Salto-Tellez, Manuel, Gollins, Simon, Wi

Journal:

European Journal of Surgical Oncology (EJSO)

Year:

2018

Language:

english

File:

PDF, 72 KB

english, 2018

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